Visualisation software¶
FERRET¶
http://ferret.pmel.noaa.gov/Ferret/home
Ferret is an interactive computer visualization and analysis environment designed to meet the needs of oceanographers and meteorologists analyzing large and complex gridded data sets. It runs on recent Unix and Mac systems, using X windows for display. PyFerret, introduced in 2012, is a Python module wrapping Ferret. The pyferret module provides Python functions so Python users can easily take advantage of Ferret’s abilities to retrieve, manipulate, visualize, and save data.
Usage
List available versions
module avail ferret
module load ferret
module show ferret
Licensing Terms and Conditions
GNUPLOT¶
Gnuplot is a portable command-line driven graphing utility for Linux, OS/2, MS Windows, OSX, VMS, and many other platforms. The source code is copyrighted but freely distributed (i.e., you don’t have to pay for it). It was originally created to allow scientists and students to visualize mathematical functions and data interactively, but has grown to support many non-interactive uses such as web scripting. It is also used as a plotting engine by third-party applications like Octave. Gnuplot has been supported and under active development since 1986.
Usage
List available versions
module avail gnuplot
module load gnuplot
GOPENMOL¶
http://www.chem.utah.edu/directory/anderson/research-group/gopen/
gOpenMol is a molecular visualization program written by Leif Laaksonen and available from him at
Usage
List available versions
module avail gopenmol
module load gopenmol
GRACE¶
https://plasma-gate.weizmann.ac.il/Grace/
Grace is a WYSIWYG 2D plotting tool for the X Window System and Mtif. Grace runs on practically any version of Unix-like OS. As well, it has been successfully ported to VMS, OS/2, and Win9/NT/2000/XP (some minor functionality may be missing, though).
MOLEKEL¶
https://ugovaretto.github.io/molekel/
Molekel is an open-source multi-platform molecular visualization program.
Usage
List available versions
module avail molekel
module load molekel
MOLDEN¶
Molden is a package for displaying Molecular Density from the Ab Initio packages GAMESS-UK, GAMESS-US and GAUSSIAN and the Semi-Empirical packages Mopac/Ampac
Usage
List available versions
module avail molden
module load molden
module show molden
PARAVIEW¶
ParaView is an open-source, multi-platform data analysis and visualization application. ParaView users can quickly build visualizations to analyze their data using qualitative and quantitative techniques. The data exploration can be done interactively in 3D or programmatically using ParaView’s batch processing capabilities.
Usage
List available versions
module avail paraview
module load paraview
VMD¶
https://www.ks.uiuc.edu/Research/vmd/
VMD is a molecular visualization program for displaying, animating, and analyzing large biomolecular systems using 3-D graphics and built-in scripting. VMD supports computers running MacOS X, Unix, or Windows, is distributed free of charge, and includes source code.
Usage
List available versions
module avail vmd
module load vmd
VISIT¶
https://visit-dav.github.io/visit-website/index.html
VisIt is an Open Source, interactive, scalable, visualization, animation and analysis tool.
Usage
List available versions
module avail visit
module load visit